3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length
47 nucleotides
Bulged bases
8FC5|1|1A|G|530, 8FC5|1|1A|C|2021, 8FC5|1|1A|A|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FC5|1|1A|A|8
8FC5|1|1A|U|9
8FC5|1|1A|G|10
8FC5|1|1A|G|11
8FC5|1|1A|U|12
8FC5|1|1A|A|13
8FC5|1|1A|A|14
8FC5|1|1A|G|15
*
8FC5|1|1A|U|525
8FC5|1|1A|A|526
8FC5|1|1A|C|527
8FC5|1|1A|A|528
8FC5|1|1A|A|529
8FC5|1|1A|G|530
8FC5|1|1A|C|531
*
8FC5|1|1A|G|2018
8FC5|1|1A|A|2019
8FC5|1|1A|A|2020
8FC5|1|1A|C|2021
8FC5|1|1A|U|2022
8FC5|1|1A|G|2023
*
8FC5|1|1A|C|2040
8FC5|1|1A|U|2041
8FC5|1|1A|A|2042
8FC5|1|1A|C|2043
*
8FC5|1|1A|G|2625
8FC5|1|1A|C|2626
8FC5|1|1A|G|2627
8FC5|1|1A|C|2628
8FC5|1|1A|A|2629
8FC5|1|1A|G|2630
*
8FC5|1|1A|C|2788
8FC5|1|1A|C|2789
8FC5|1|1A|A|2790
8FC5|1|1A|C|2791
*
8FC5|1|1A|G|2805
8FC5|1|1A|G|2807
8FC5|1|1A|U|2808
8FC5|1|1A|A|2809
8FC5|1|1A|A|2810
8FC5|1|1A|G|2811
*
8FC5|1|1A|C|2889
8FC5|1|1A|G|2891
8FC5|1|1A|A|2892
8FC5|1|1A|G|2893
8FC5|1|1A|G|2894
8FC5|1|1A|U|2895

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1E
50S ribosomal protein L3
Chain 1N
50S ribosomal protein L13
Chain 1U
50S ribosomal protein L20
Chain 1W
50S ribosomal protein L22

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