J8_8FIZ_001

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CCUG*CC*GAGG

Length

41 nucleotides

Bulged bases

8FIZ|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FIZ|1|BA|C|8
8FIZ|1|BA|G|9
8FIZ|1|BA|A|10
8FIZ|1|BA|C|11
8FIZ|1|BA|U|12
8FIZ|1|BA|A|13
8FIZ|1|BA|A|14
8FIZ|1|BA|G|15
*
8FIZ|1|BA|U|525
8FIZ|1|BA|A|526
8FIZ|1|BA|C|527
8FIZ|1|BA|A|528
8FIZ|1|BA|A|529
8FIZ|1|BA|G|530
8FIZ|1|BA|C|531
*
8FIZ|1|BA|G|2018
8FIZ|1|BA|A|2019
8FIZ|1|BA|A|2020
8FIZ|1|BA|C|2021
8FIZ|1|BA|U|2022
8FIZ|1|BA|C|2023
*
8FIZ|1|BA|G|2040
8FIZ|1|BA|U|2041
8FIZ|1|BA|A|2042
8FIZ|1|BA|C|2043
*
8FIZ|1|BA|G|2625
8FIZ|1|BA|C|2626
8FIZ|1|BA|G|2627
8FIZ|1|BA|C|2628
8FIZ|1|BA|U|2629
8FIZ|1|BA|G|2630
*
8FIZ|1|BA|C|2788
8FIZ|1|BA|C|2789
8FIZ|1|BA|U|2790
8FIZ|1|BA|G|2791
*
8FIZ|1|BA|C|2805
8FIZ|1|BA|C|2806
*
8FIZ|1|BA|G|2892
8FIZ|1|BA|A|2893
8FIZ|1|BA|G|2894
8FIZ|1|BA|G|2895

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L32

Chain BR

50S ribosomal protein L13

Chain BX

50S ribosomal protein L20

Chain BZ

50S ribosomal protein L22