Loop J8_8UU7

3D structure

PDB id: 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: UUAGAAAG*UACAAGU*AUAGUA*UUAC*GCGCAG*CCAU*AGUAAG*CGAGGA
Length: 47 nucleotides
Bulged bases: 8UU7|1|A|G|575, 8UU7|1|A|G|2054
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8UU7|1|A|U|8
8UU7|1|A|U|9
8UU7|1|A|A|10
8UU7|1|A|G|11
8UU7|1|A|A|12
8UU7|1|A|A|13
8UU7|1|A|A|14
8UU7|1|A|G|15
*
8UU7|1|A|U|570
8UU7|1|A|A|571
8UU7|1|A|C|572
8UU7|1|A|A|573
8UU7|1|A|A|574
8UU7|1|A|G|575
8UU7|1|A|U|576
*
8UU7|1|A|A|2051
8UU7|1|A|U|2052
8UU7|1|A|A|2053
8UU7|1|A|G|2054
8UU7|1|A|U|2055
8UU7|1|A|A|2056
*
8UU7|1|A|U|2073
8UU7|1|A|U|2074
8UU7|1|A|A|2075
8UU7|1|A|C|2076
*
8UU7|1|A|G|2658
8UU7|1|A|C|2659
8UU7|1|A|G|2660
8UU7|1|A|C|2661
8UU7|1|A|A|2662
8UU7|1|A|G|2663
*
8UU7|1|A|C|2821
8UU7|1|A|C|2822
8UU7|1|A|A|2823
8UU7|1|A|U|2824
*
8UU7|1|A|A|2835
8UU7|1|A|G|2836
8UU7|1|A|U|2837
8UU7|1|A|A|2838
8UU7|1|A|A|2839
8UU7|1|A|G|2840
*
8UU7|1|A|C|2918
8UU7|1|A|G|2919
8UU7|1|A|A|2920
8UU7|1|A|G|2921
8UU7|1|A|G|2922
8UU7|1|A|A|2923

Current chains

Chain A: 23S Ribosomal RNA

Nearby chains

Chain 4: Large ribosomal subunit protein bL32
Chain D: Large ribosomal subunit protein uL3
Chain L: Large ribosomal subunit protein uL13
Chain S: Large ribosomal subunit protein bL20
Chain U: Large ribosomal subunit protein uL22

J8_8UU7_001