Loop J8_8V9J

3D structure

PDB id: 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8V9J|1|A|U|5
8V9J|1|A|G|6
8V9J|1|A|U|7
8V9J|1|A|U|8
8V9J|1|A|U|9
8V9J|1|A|A|10
8V9J|1|A|A|11
8V9J|1|A|G|12
*
8V9J|1|A|U|612
8V9J|1|A|A|613
8V9J|1|A|C|614
8V9J|1|A|A|615
8V9J|1|A|A|616
8V9J|1|A|U|617
8V9J|1|A|C|618
*
8V9J|1|A|G|2242
8V9J|1|A|C|2243
8V9J|1|A|A|2244
8V9J|1|A|C|2245
8V9J|1|A|U|2246
8V9J|1|A|A|2247
*
8V9J|1|A|U|2264
8V9J|1|A|U|2265
8V9J|1|A|A|2266
8V9J|1|A|C|2267
*
8V9J|1|A|G|2849
8V9J|1|A|C|2850
8V9J|1|A|G|2851
8V9J|1|A|U|2852
8V9J|1|A|C|2853
8V9J|1|A|A|2854
*
8V9J|1|A|U|3012
8V9J|1|A|C|3013
8V9J|1|A|A|3014
8V9J|1|A|C|3015
*
8V9J|1|A|G|3027
8V9J|1|A|A|3028
8V9J|1|A|U|3029
8V9J|1|A|A|3030
8V9J|1|A|A|3031
8V9J|1|A|G|3032
*
8V9J|1|A|C|3110
8V9J|1|A|G|3111
8V9J|1|A|A|3112
8V9J|1|A|A|3113
8V9J|1|A|A|3114
8V9J|1|A|A|3115

Current chains

Chain A: 23S Ribosomal RNA

Nearby chains

Chain 4: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain L: 50S Ribosomal Protein L13
Chain S: 50S Ribosomal Protein L20
Chain U: 50S Ribosomal Protein L22

J8_8V9J_001