Loop J8_8VPK

3D structure

PDB id: 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCAGA*UUCUCAC*GAUAAG*CGAAAA
Length: 52 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8VPK|1|A|U|5
8VPK|1|A|G|6
8VPK|1|A|U|7
8VPK|1|A|U|8
8VPK|1|A|U|9
8VPK|1|A|A|10
8VPK|1|A|A|11
8VPK|1|A|G|12
*
8VPK|1|A|U|612
8VPK|1|A|A|613
8VPK|1|A|C|614
8VPK|1|A|A|615
8VPK|1|A|A|616
8VPK|1|A|U|617
8VPK|1|A|C|618
*
8VPK|1|A|G|2242
8VPK|1|A|C|2243
8VPK|1|A|A|2244
8VPK|1|A|C|2245
8VPK|1|A|U|2246
8VPK|1|A|A|2247
*
8VPK|1|A|U|2264
8VPK|1|A|U|2265
8VPK|1|A|A|2266
8VPK|1|A|C|2267
*
8VPK|1|A|G|2849
8VPK|1|A|C|2850
8VPK|1|A|G|2851
8VPK|1|A|U|2852
8VPK|1|A|C|2853
8VPK|1|A|A|2854
8VPK|1|A|G|2855
8VPK|1|A|A|2856
*
8VPK|1|A|U|3009
8VPK|1|A|U|3010
8VPK|1|A|C|3011
8VPK|1|A|U|3012
8VPK|1|A|C|3013
8VPK|1|A|A|3014
8VPK|1|A|C|3015
*
8VPK|1|A|G|3027
8VPK|1|A|A|3028
8VPK|1|A|U|3029
8VPK|1|A|A|3030
8VPK|1|A|A|3031
8VPK|1|A|G|3032
*
8VPK|1|A|C|3110
8VPK|1|A|G|3111
8VPK|1|A|A|3112
8VPK|1|A|A|3113
8VPK|1|A|A|3114
8VPK|1|A|A|3115

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain D: 50S ribosomal protein L3
Chain K: 50S Ribosomal Protein L13
Chain R: 50S Ribosomal Protein L20
Chain T: 50S Ribosomal Protein L22
Chain b: 50S ribosomal protein L32

J8_8VPK_001