Loop J8_8VRL

3D structure

PDB id: 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: 8VRL|1|A|U|617, 8VRL|1|A|C|2245
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8VRL|1|A|U|5
8VRL|1|A|G|6
8VRL|1|A|U|7
8VRL|1|A|U|8
8VRL|1|A|U|9
8VRL|1|A|A|10
8VRL|1|A|A|11
8VRL|1|A|G|12
*
8VRL|1|A|U|612
8VRL|1|A|A|613
8VRL|1|A|C|614
8VRL|1|A|A|615
8VRL|1|A|A|616
8VRL|1|A|U|617
8VRL|1|A|C|618
*
8VRL|1|A|G|2242
8VRL|1|A|C|2243
8VRL|1|A|A|2244
8VRL|1|A|C|2245
8VRL|1|A|U|2246
8VRL|1|A|A|2247
*
8VRL|1|A|U|2264
8VRL|1|A|U|2265
8VRL|1|A|A|2266
8VRL|1|A|C|2267
*
8VRL|1|A|G|2849
8VRL|1|A|C|2850
8VRL|1|A|G|2851
8VRL|1|A|U|2852
8VRL|1|A|C|2853
8VRL|1|A|A|2854
*
8VRL|1|A|U|3012
8VRL|1|A|C|3013
8VRL|1|A|A|3014
8VRL|1|A|C|3015
*
8VRL|1|A|G|3027
8VRL|1|A|A|3028
8VRL|1|A|U|3029
8VRL|1|A|A|3030
8VRL|1|A|A|3031
8VRL|1|A|G|3032
*
8VRL|1|A|C|3110
8VRL|1|A|G|3111
8VRL|1|A|A|3112
8VRL|1|A|A|3113
8VRL|1|A|A|3114
8VRL|1|A|A|3115

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain D: 50S ribosomal protein L3
Chain K: Large ribosomal subunit protein uL13
Chain R: Large ribosomal subunit protein bL20
Chain T: Large ribosomal subunit protein uL22
Chain b: 50S ribosomal protein L32

J8_8VRL_001