Loop J8_8WIC

3D structure

PDB id: 8WIC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8WIC|1|A|U|5
8WIC|1|A|G|6
8WIC|1|A|U|7
8WIC|1|A|U|8
8WIC|1|A|U|9
8WIC|1|A|A|10
8WIC|1|A|A|11
8WIC|1|A|G|12
*
8WIC|1|A|U|612
8WIC|1|A|A|613
8WIC|1|A|C|614
8WIC|1|A|A|615
8WIC|1|A|A|616
8WIC|1|A|U|617
8WIC|1|A|C|618
*
8WIC|1|A|G|2242
8WIC|1|A|C|2243
8WIC|1|A|A|2244
8WIC|1|A|C|2245
8WIC|1|A|U|2246
8WIC|1|A|A|2247
*
8WIC|1|A|U|2264
8WIC|1|A|U|2265
8WIC|1|A|A|2266
8WIC|1|A|C|2267
*
8WIC|1|A|G|2849
8WIC|1|A|C|2850
8WIC|1|A|G|2851
8WIC|1|A|U|2852
8WIC|1|A|C|2853
8WIC|1|A|A|2854
*
8WIC|1|A|U|3012
8WIC|1|A|C|3013
8WIC|1|A|A|3014
8WIC|1|A|C|3015
*
8WIC|1|A|G|3027
8WIC|1|A|A|3028
8WIC|1|A|U|3029
8WIC|1|A|A|3030
8WIC|1|A|A|3031
8WIC|1|A|G|3032
*
8WIC|1|A|C|3110
8WIC|1|A|G|3111
8WIC|1|A|A|3112
8WIC|1|A|A|3113
8WIC|1|A|A|3114
8WIC|1|A|A|3115

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 5: 50S ribosomal protein L32
Chain F: 50S ribosomal protein L3
Chain M: 50S ribosomal protein L13
Chain T: 50S ribosomal protein L20
Chain V: 50S ribosomal protein L22

J8_8WIC_002