Loop J8_8XZ3

3D structure

PDB id: 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8XZ3|1|A|U|5
8XZ3|1|A|G|6
8XZ3|1|A|U|7
8XZ3|1|A|U|8
8XZ3|1|A|U|9
8XZ3|1|A|A|10
8XZ3|1|A|A|11
8XZ3|1|A|G|12
*
8XZ3|1|A|U|612
8XZ3|1|A|A|613
8XZ3|1|A|C|614
8XZ3|1|A|A|615
8XZ3|1|A|A|616
8XZ3|1|A|U|617
8XZ3|1|A|C|618
*
8XZ3|1|A|G|2242
8XZ3|1|A|C|2243
8XZ3|1|A|A|2244
8XZ3|1|A|C|2245
8XZ3|1|A|U|2246
8XZ3|1|A|A|2247
*
8XZ3|1|A|U|2264
8XZ3|1|A|U|2265
8XZ3|1|A|A|2266
8XZ3|1|A|C|2267
*
8XZ3|1|A|G|2849
8XZ3|1|A|C|2850
8XZ3|1|A|G|2851
8XZ3|1|A|U|2852
8XZ3|1|A|C|2853
8XZ3|1|A|A|2854
*
8XZ3|1|A|U|3012
8XZ3|1|A|C|3013
8XZ3|1|A|A|3014
8XZ3|1|A|C|3015
*
8XZ3|1|A|G|3027
8XZ3|1|A|A|3028
8XZ3|1|A|U|3029
8XZ3|1|A|A|3030
8XZ3|1|A|A|3031
8XZ3|1|A|G|3032
*
8XZ3|1|A|C|3110
8XZ3|1|A|G|3111
8XZ3|1|A|A|3112
8XZ3|1|A|A|3113
8XZ3|1|A|A|3114
8XZ3|1|A|A|3115

Current chains

Chain A: 23S rRNA

Nearby chains

Chain D: Large ribosomal subunit protein uL3
Chain K: Large ribosomal subunit protein uL13
Chain R: Large ribosomal subunit protein bL20
Chain T: Large ribosomal subunit protein uL22
Chain b: Large ribosomal subunit protein bL32

J8_8XZ3_001