Loop J8_9B00

3D structure

PDB id: 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 9B00|1|1A|G|530, 9B00|1|1A|C|2021, 9B00|1|1A|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9B00|1|1A|A|8
9B00|1|1A|U|9
9B00|1|1A|G|10
9B00|1|1A|G|11
9B00|1|1A|U|12
9B00|1|1A|A|13
9B00|1|1A|A|14
9B00|1|1A|G|15
*
9B00|1|1A|U|525
9B00|1|1A|A|526
9B00|1|1A|C|527
9B00|1|1A|A|528
9B00|1|1A|A|529
9B00|1|1A|G|530
9B00|1|1A|C|531
*
9B00|1|1A|G|2018
9B00|1|1A|A|2019
9B00|1|1A|A|2020
9B00|1|1A|C|2021
9B00|1|1A|U|2022
9B00|1|1A|G|2023
*
9B00|1|1A|C|2040
9B00|1|1A|U|2041
9B00|1|1A|A|2042
9B00|1|1A|C|2043
*
9B00|1|1A|G|2625
9B00|1|1A|C|2626
9B00|1|1A|G|2627
9B00|1|1A|C|2628
9B00|1|1A|A|2629
9B00|1|1A|G|2630
*
9B00|1|1A|C|2788
9B00|1|1A|C|2789
9B00|1|1A|A|2790
9B00|1|1A|C|2791
*
9B00|1|1A|G|2805
9B00|1|1A|G|2807
9B00|1|1A|U|2808
9B00|1|1A|A|2809
9B00|1|1A|A|2810
9B00|1|1A|G|2811
*
9B00|1|1A|C|2889
9B00|1|1A|G|2891
9B00|1|1A|A|2892
9B00|1|1A|G|2893
9B00|1|1A|G|2894
9B00|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_9B00_001