Loop J8_9EBB

3D structure

PDB id: 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

Loop

Sequence: GUGUCUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAAC
Length: 49 nucleotides
Bulged bases: 9EBB|1|I|U|618, 9EBB|1|I|C|2259, 9EBB|1|I|A|3028
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9EBB|1|I|G|7
9EBB|1|I|U|8
9EBB|1|I|G|9
9EBB|1|I|U|10
9EBB|1|I|C|11
9EBB|1|I|U|12
9EBB|1|I|A|13
9EBB|1|I|A|14
9EBB|1|I|G|15
*
9EBB|1|I|U|613
9EBB|1|I|A|614
9EBB|1|I|C|615
9EBB|1|I|A|616
9EBB|1|I|A|617
9EBB|1|I|U|618
9EBB|1|I|C|619
*
9EBB|1|I|G|2256
9EBB|1|I|C|2257
9EBB|1|I|A|2258
9EBB|1|I|C|2259
9EBB|1|I|U|2260
9EBB|1|I|A|2261
*
9EBB|1|I|U|2278
9EBB|1|I|U|2279
9EBB|1|I|A|2280
9EBB|1|I|C|2281
*
9EBB|1|I|G|2863
9EBB|1|I|C|2864
9EBB|1|I|G|2865
9EBB|1|I|U|2866
9EBB|1|I|C|2867
9EBB|1|I|A|2868
*
9EBB|1|I|U|3026
9EBB|1|I|C|3027
9EBB|1|I|A|3028
9EBB|1|I|C|3029
*
9EBB|1|I|G|3041
9EBB|1|I|A|3042
9EBB|1|I|U|3043
9EBB|1|I|A|3044
9EBB|1|I|A|3045
9EBB|1|I|G|3046
*
9EBB|1|I|C|3124
9EBB|1|I|G|3125
9EBB|1|I|A|3126
9EBB|1|I|A|3127
9EBB|1|I|A|3128
9EBB|1|I|A|3129
9EBB|1|I|C|3130

Current chains

Chain I: 23S ribosomal RNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain J: 50S ribosomal protein L13
Chain Q: 50S ribosomal protein L20
Chain S: 50S ribosomal protein L22

J8_9EBB_001