J8_9KDT_001
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAAAGAUUAAGCCAUGCAUGUCUAAG*CUGCGAAUGGCUCAUUAAAUC*GCC*GUGAC*GGAGAG*CAC*GGCAGCAGGCGCGCAAAUUACCCACUCC*GGGAGGUAGUGACG
- Length
- 106 nucleotides
- Bulged bases
- 9KDT|1|S2|A|45, 9KDT|1|S2|C|49, 9KDT|1|S2|A|54, 9KDT|1|S2|A|60, 9KDT|1|S2|A|61, 9KDT|1|S2|A|92, 9KDT|1|S2|G|408, 9KDT|1|S2|C|484, 9KDT|1|S2|A|494, 9KDT|1|S2|G|507, 9KDT|1|S2|A|509, 9KDT|1|S2|A|517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|C|37
9KDT|1|S2|A|38
9KDT|1|S2|A|39
9KDT|1|S2|A|40
9KDT|1|S2|G|41
9KDT|1|S2|A|42
9KDT|1|S2|U|43
9KDT|1|S2|U|44
9KDT|1|S2|A|45
9KDT|1|S2|A|46
9KDT|1|S2|G|47
9KDT|1|S2|C|48
9KDT|1|S2|C|49
9KDT|1|S2|A|50
9KDT|1|S2|U|51
9KDT|1|S2|G|52
9KDT|1|S2|C|53
9KDT|1|S2|A|54
9KDT|1|S2|U|55
9KDT|1|S2|G|56
9KDT|1|S2|U|57
9KDT|1|S2|C|58
9KDT|1|S2|U|59
9KDT|1|S2|A|60
9KDT|1|S2|A|61
9KDT|1|S2|G|62
*
9KDT|1|S2|C|86
9KDT|1|S2|U|87
9KDT|1|S2|G|88
9KDT|1|S2|C|89
9KDT|1|S2|G|90
9KDT|1|S2|A|91
9KDT|1|S2|A|92
9KDT|1|S2|U|93
9KDT|1|S2|G|94
9KDT|1|S2|G|95
9KDT|1|S2|C|96
9KDT|1|S2|U|97
9KDT|1|S2|C|98
9KDT|1|S2|A|99
9KDT|1|S2|U|100
9KDT|1|S2|U|101
9KDT|1|S2|A|102
9KDT|1|S2|A|103
9KDT|1|S2|A|104
9KDT|1|S2|U|105
9KDT|1|S2|C|106
*
9KDT|1|S2|G|356
9KDT|1|S2|C|357
9KDT|1|S2|C|358
*
9KDT|1|S2|G|406
9KDT|1|S2|U|407
9KDT|1|S2|G|408
9KDT|1|S2|A|409
9KDT|1|S2|C|410
*
9KDT|1|S2|G|432
9KDT|1|S2|G|433
9KDT|1|S2|A|434
9KDT|1|S2|G|435
9KDT|1|S2|A|436
9KDT|1|S2|G|437
*
9KDT|1|S2|C|458
9KDT|1|S2|A|459
9KDT|1|S2|C|460
*
9KDT|1|S2|G|471
9KDT|1|S2|G|472
9KDT|1|S2|C|473
9KDT|1|S2|A|474
9KDT|1|S2|G|475
9KDT|1|S2|C|476
9KDT|1|S2|A|477
9KDT|1|S2|G|478
9KDT|1|S2|G|479
9KDT|1|S2|C|480
9KDT|1|S2|G|481
9KDT|1|S2|C|482
9KDT|1|S2|G|483
9KDT|1|S2|C|484
9KDT|1|S2|A|485
9KDT|1|S2|A|486
9KDT|1|S2|A|487
9KDT|1|S2|U|488
9KDT|1|S2|U|489
9KDT|1|S2|A|490
9KDT|1|S2|C|491
9KDT|1|S2|C|492
9KDT|1|S2|C|493
9KDT|1|S2|A|494
9KDT|1|S2|C|495
9KDT|1|S2|U|496
9KDT|1|S2|C|497
9KDT|1|S2|C|498
*
9KDT|1|S2|G|506
9KDT|1|S2|G|507
9KDT|1|S2|G|508
9KDT|1|S2|A|509
9KDT|1|S2|G|510
9KDT|1|S2|G|511
9KDT|1|S2|U|512
9KDT|1|S2|A|513
9KDT|1|S2|G|514
9KDT|1|S2|U|515
9KDT|1|S2|G|516
9KDT|1|S2|A|517
9KDT|1|S2|C|518
9KDT|1|S2|G|519
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain LV
- Large ribosomal subunit protein uL14
- Chain SE
- Small ribosomal subunit protein eS4
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SX
- Small ribosomal subunit protein uS12
- Chain SY
- Small ribosomal subunit protein eS24
Coloring options: