J8_9KDW_001
3D structure
- PDB id
- 9KDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CAAAGAUUAAGCCAUGCAUGUCUAAG*CUGCGAAUGGCUCAUUAAAUC*GCC*GUGAC*GGAGAG*CAC*GGCAGCAGGCGCGCAAAUUA*UAGUGACG
- Length
- 92 nucleotides
- Bulged bases
- 9KDW|1|S2|A|45, 9KDW|1|S2|C|49, 9KDW|1|S2|A|54, 9KDW|1|S2|A|60, 9KDW|1|S2|A|61, 9KDW|1|S2|A|92, 9KDW|1|S2|G|408, 9KDW|1|S2|C|484, 9KDW|1|S2|A|517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDW|1|S2|C|37
9KDW|1|S2|A|38
9KDW|1|S2|A|39
9KDW|1|S2|A|40
9KDW|1|S2|G|41
9KDW|1|S2|A|42
9KDW|1|S2|U|43
9KDW|1|S2|U|44
9KDW|1|S2|A|45
9KDW|1|S2|A|46
9KDW|1|S2|G|47
9KDW|1|S2|C|48
9KDW|1|S2|C|49
9KDW|1|S2|A|50
9KDW|1|S2|U|51
9KDW|1|S2|G|52
9KDW|1|S2|C|53
9KDW|1|S2|A|54
9KDW|1|S2|U|55
9KDW|1|S2|G|56
9KDW|1|S2|U|57
9KDW|1|S2|C|58
9KDW|1|S2|U|59
9KDW|1|S2|A|60
9KDW|1|S2|A|61
9KDW|1|S2|G|62
*
9KDW|1|S2|C|86
9KDW|1|S2|U|87
9KDW|1|S2|G|88
9KDW|1|S2|C|89
9KDW|1|S2|G|90
9KDW|1|S2|A|91
9KDW|1|S2|A|92
9KDW|1|S2|U|93
9KDW|1|S2|G|94
9KDW|1|S2|G|95
9KDW|1|S2|C|96
9KDW|1|S2|U|97
9KDW|1|S2|C|98
9KDW|1|S2|A|99
9KDW|1|S2|U|100
9KDW|1|S2|U|101
9KDW|1|S2|A|102
9KDW|1|S2|A|103
9KDW|1|S2|A|104
9KDW|1|S2|U|105
9KDW|1|S2|C|106
*
9KDW|1|S2|G|356
9KDW|1|S2|C|357
9KDW|1|S2|C|358
*
9KDW|1|S2|G|406
9KDW|1|S2|U|407
9KDW|1|S2|G|408
9KDW|1|S2|A|409
9KDW|1|S2|C|410
*
9KDW|1|S2|G|432
9KDW|1|S2|G|433
9KDW|1|S2|A|434
9KDW|1|S2|G|435
9KDW|1|S2|A|436
9KDW|1|S2|G|437
*
9KDW|1|S2|C|458
9KDW|1|S2|A|459
9KDW|1|S2|C|460
*
9KDW|1|S2|G|471
9KDW|1|S2|G|472
9KDW|1|S2|C|473
9KDW|1|S2|A|474
9KDW|1|S2|G|475
9KDW|1|S2|C|476
9KDW|1|S2|A|477
9KDW|1|S2|G|478
9KDW|1|S2|G|479
9KDW|1|S2|C|480
9KDW|1|S2|G|481
9KDW|1|S2|C|482
9KDW|1|S2|G|483
9KDW|1|S2|C|484
9KDW|1|S2|A|485
9KDW|1|S2|A|486
9KDW|1|S2|A|487
9KDW|1|S2|U|488
9KDW|1|S2|U|489
9KDW|1|S2|A|490
*
9KDW|1|S2|U|512
9KDW|1|S2|A|513
9KDW|1|S2|G|514
9KDW|1|S2|U|515
9KDW|1|S2|G|516
9KDW|1|S2|A|517
9KDW|1|S2|C|518
9KDW|1|S2|G|519
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain LV
- Large ribosomal subunit protein uL14
- Chain SE
- Small ribosomal subunit protein eS4
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SX
- Small ribosomal subunit protein uS12
- Chain SY
- Small ribosomal subunit protein eS24
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