J8_9MTS_001

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

47 nucleotides

Bulged bases

9MTS|1|1A|G|530, 9MTS|1|1A|C|2021, 9MTS|1|1A|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTS|1|1A|A|8
9MTS|1|1A|U|9
9MTS|1|1A|G|10
9MTS|1|1A|G|11
9MTS|1|1A|U|12
9MTS|1|1A|A|13
9MTS|1|1A|A|14
9MTS|1|1A|G|15
*
9MTS|1|1A|U|525
9MTS|1|1A|A|526
9MTS|1|1A|C|527
9MTS|1|1A|A|528
9MTS|1|1A|A|529
9MTS|1|1A|G|530
9MTS|1|1A|C|531
*
9MTS|1|1A|G|2018
9MTS|1|1A|A|2019
9MTS|1|1A|A|2020
9MTS|1|1A|C|2021
9MTS|1|1A|U|2022
9MTS|1|1A|G|2023
*
9MTS|1|1A|C|2040
9MTS|1|1A|U|2041
9MTS|1|1A|A|2042
9MTS|1|1A|C|2043
*
9MTS|1|1A|G|2625
9MTS|1|1A|C|2626
9MTS|1|1A|G|2627
9MTS|1|1A|C|2628
9MTS|1|1A|A|2629
9MTS|1|1A|G|2630
*
9MTS|1|1A|C|2788
9MTS|1|1A|C|2789
9MTS|1|1A|A|2790
9MTS|1|1A|C|2791
*
9MTS|1|1A|G|2805
9MTS|1|1A|G|2807
9MTS|1|1A|U|2808
9MTS|1|1A|A|2809
9MTS|1|1A|A|2810
9MTS|1|1A|G|2811
*
9MTS|1|1A|C|2889
9MTS|1|1A|G|2891
9MTS|1|1A|A|2892
9MTS|1|1A|G|2893
9MTS|1|1A|G|2894
9MTS|1|1A|U|2895

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22