Loop J8_9PJ8

3D structure

PDB id: 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description: C. acnes 70S ribosome bound to Sarecycline
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

Loop

Sequence: GUUGUGUAG*UGCAAGC*GCAUUA*UUAC*GCGGAG*CCAC*GGUAAG*CGAGGACU
Length: 50 nucleotides
Bulged bases: 9PJ8|1|a|U|12, 9PJ8|1|a|A|2972
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9PJ8|1|a|G|6
9PJ8|1|a|U|7
9PJ8|1|a|U|8
9PJ8|1|a|G|9
9PJ8|1|a|U|10
9PJ8|1|a|G|11
9PJ8|1|a|U|12
9PJ8|1|a|A|13
9PJ8|1|a|G|14
*
9PJ8|1|a|U|613
9PJ8|1|a|G|614
9PJ8|1|a|C|615
9PJ8|1|a|A|616
9PJ8|1|a|A|617
9PJ8|1|a|G|618
9PJ8|1|a|C|619
*
9PJ8|1|a|G|2201
9PJ8|1|a|C|2202
9PJ8|1|a|A|2203
9PJ8|1|a|U|2204
9PJ8|1|a|U|2205
9PJ8|1|a|A|2206
*
9PJ8|1|a|U|2223
9PJ8|1|a|U|2224
9PJ8|1|a|A|2225
9PJ8|1|a|C|2226
*
9PJ8|1|a|G|2807
9PJ8|1|a|C|2808
9PJ8|1|a|G|2809
9PJ8|1|a|G|2810
9PJ8|1|a|A|2811
9PJ8|1|a|G|2812
*
9PJ8|1|a|C|2970
9PJ8|1|a|C|2971
9PJ8|1|a|A|2972
9PJ8|1|a|C|2973
*
9PJ8|1|a|G|2986
9PJ8|1|a|G|2987
9PJ8|1|a|U|2988
9PJ8|1|a|A|2989
9PJ8|1|a|A|2990
9PJ8|1|a|G|2991
*
9PJ8|1|a|C|3069
9PJ8|1|a|G|3070
9PJ8|1|a|A|3071
9PJ8|1|a|G|3072
9PJ8|1|a|G|3073
9PJ8|1|a|A|3074
9PJ8|1|a|C|3075
9PJ8|1|a|U|3076

Current chains

Chain a: 23S rRNA

Nearby chains

Chain d: 50S ribosomal protein L3
Chain i: 50S ribosomal protein L13
Chain p: 50S ribosomal protein L20
Chain r: 50S ribosomal protein L22
Chain z: 50S ribosomal protein L32

J8_9PJ8_001