Loop J8_9Q6S

3D structure

PDB id: 9Q6S (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 9Q6S|1|1A|G|530, 9Q6S|1|1A|C|2021, 9Q6S|1|1A|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q6S|1|1A|A|8
9Q6S|1|1A|U|9
9Q6S|1|1A|G|10
9Q6S|1|1A|G|11
9Q6S|1|1A|U|12
9Q6S|1|1A|A|13
9Q6S|1|1A|A|14
9Q6S|1|1A|G|15
*
9Q6S|1|1A|U|525
9Q6S|1|1A|A|526
9Q6S|1|1A|C|527
9Q6S|1|1A|A|528
9Q6S|1|1A|A|529
9Q6S|1|1A|G|530
9Q6S|1|1A|C|531
*
9Q6S|1|1A|G|2018
9Q6S|1|1A|A|2019
9Q6S|1|1A|A|2020
9Q6S|1|1A|C|2021
9Q6S|1|1A|U|2022
9Q6S|1|1A|G|2023
*
9Q6S|1|1A|C|2040
9Q6S|1|1A|U|2041
9Q6S|1|1A|A|2042
9Q6S|1|1A|C|2043
*
9Q6S|1|1A|G|2625
9Q6S|1|1A|C|2626
9Q6S|1|1A|G|2627
9Q6S|1|1A|C|2628
9Q6S|1|1A|A|2629
9Q6S|1|1A|G|2630
*
9Q6S|1|1A|C|2788
9Q6S|1|1A|C|2789
9Q6S|1|1A|A|2790
9Q6S|1|1A|C|2791
*
9Q6S|1|1A|G|2805
9Q6S|1|1A|G|2807
9Q6S|1|1A|U|2808
9Q6S|1|1A|A|2809
9Q6S|1|1A|A|2810
9Q6S|1|1A|G|2811
*
9Q6S|1|1A|C|2889
9Q6S|1|1A|G|2891
9Q6S|1|1A|A|2892
9Q6S|1|1A|G|2893
9Q6S|1|1A|G|2894
9Q6S|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_9Q6S_001