Loop J9_2O44

3D structure

PDB id: 2O44 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: AUAGUAAG*UACAAGCAG*CGUGCCUAUUGAAGCAUGAG*CA*UGAAUUGG*CCUAC*GCGCAG*CC*GU
Length: 62 nucleotides
Bulged bases: 2O44|1|A|C|537, 2O44|1|A|G|540, 2O44|1|A|C|583, 2O44|1|A|U|2004
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

2O44|1|A|A|8
2O44|1|A|U|9
2O44|1|A|A|10
2O44|1|A|G|11
2O44|1|A|U|12
2O44|1|A|A|13
2O44|1|A|A|14
2O44|1|A|G|15
*
2O44|1|A|U|535
2O44|1|A|A|536
2O44|1|A|C|537
2O44|1|A|A|538
2O44|1|A|A|539
2O44|1|A|G|540
2O44|1|A|C|541
2O44|1|A|A|542
2O44|1|A|G|543
*
2O44|1|A|C|569
2O44|1|A|G|570
2O44|1|A|U|571
2O44|1|A|G|572
2O44|1|A|C|573
2O44|1|A|C|574
2O44|1|A|U|575
2O44|1|A|A|576
2O44|1|A|U|577
2O44|1|A|U|578
2O44|1|A|G|579
2O44|1|A|A|580
2O44|1|A|A|581
2O44|1|A|G|582
2O44|1|A|C|583
2O44|1|A|A|584
2O44|1|A|U|585
2O44|1|A|G|586
2O44|1|A|A|587
2O44|1|A|G|588
*
2O44|1|A|C|1274
2O44|1|A|A|1275
*
2O44|1|A|U|2000
2O44|1|A|G|2001
2O44|1|A|A|2002
2O44|1|A|A|2003
2O44|1|A|U|2004
2O44|1|A|U|2005
2O44|1|A|G|2006
2O44|1|A|G|2007
*
2O44|1|A|C|2022
2O44|1|A|C|2023
2O44|1|A|U|2024
2O44|1|A|A|2025
2O44|1|A|C|2026
*
2O44|1|A|G|2604
2O44|1|A|C|2605
2O44|1|A|G|2606
2O44|1|A|C|2607
2O44|1|A|A|2608
2O44|1|A|G|2609
*
2O44|1|A|C|2768
2O44|1|A|C|2769
*
2O44|1|A|G|2868
2O44|1|A|U|2869

Current chains

Chain A: 23S rRNA

Nearby chains

No other chains within 10Å

J9_2O44_001