J9_3PIP_001
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- AUAGUAAGGG*CUUACAAGC*GAAUUG*CUAC*GCGCAG*CCACU*AGGUAAGACUCC*GGUUAAG*CAUCAGUCGAGGU
- Length
- 72 nucleotides
- Bulged bases
- 3PIP|1|X|G|540, 3PIP|1|X|U|2004, 3PIP|1|X|U|2808, 3PIP|1|X|A|2810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3PIP|1|X|A|8
3PIP|1|X|U|9
3PIP|1|X|A|10
3PIP|1|X|G|11
3PIP|1|X|U|12
3PIP|1|X|A|13
3PIP|1|X|A|14
3PIP|1|X|G|15
3PIP|1|X|G|16
3PIP|1|X|G|17
*
3PIP|1|X|C|533
3PIP|1|X|U|534
3PIP|1|X|U|535
3PIP|1|X|A|536
3PIP|1|X|C|537
3PIP|1|X|A|538
3PIP|1|X|A|539
3PIP|1|X|G|540
3PIP|1|X|C|541
*
3PIP|1|X|G|2001
3PIP|1|X|A|2002
3PIP|1|X|A|2003
3PIP|1|X|U|2004
3PIP|1|X|U|2005
3PIP|1|X|G|2006
*
3PIP|1|X|C|2023
3PIP|1|X|U|2024
3PIP|1|X|A|2025
3PIP|1|X|C|2026
*
3PIP|1|X|G|2604
3PIP|1|X|C|2605
3PIP|1|X|G|2606
3PIP|1|X|C|2607
3PIP|1|X|A|2608
3PIP|1|X|G|2609
*
3PIP|1|X|C|2768
3PIP|1|X|C|2769
3PIP|1|X|A|2770
3PIP|1|X|C|2771
3PIP|1|X|U|2772
*
3PIP|1|X|A|2780
3PIP|1|X|G|2781
3PIP|1|X|G|2782
3PIP|1|X|U|2783
3PIP|1|X|A|2784
3PIP|1|X|A|2785
3PIP|1|X|G|2786
3PIP|1|X|A|2787
3PIP|1|X|C|2788
3PIP|1|X|U|2789
3PIP|1|X|C|2790
3PIP|1|X|C|2791
*
3PIP|1|X|G|2805
3PIP|1|X|G|2806
3PIP|1|X|U|2807
3PIP|1|X|U|2808
3PIP|1|X|A|2809
3PIP|1|X|A|2810
3PIP|1|X|G|2811
*
3PIP|1|X|C|2857
3PIP|1|X|A|2858
3PIP|1|X|U|2859
3PIP|1|X|C|2860
3PIP|1|X|A|2861
3PIP|1|X|G|2862
3PIP|1|X|U|2863
3PIP|1|X|C|2864
3PIP|1|X|G|2865
3PIP|1|X|A|2866
3PIP|1|X|G|2867
3PIP|1|X|G|2868
3PIP|1|X|U|2869
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
Coloring options: