Loop J9_4V4G

3D structure

PDB id: 4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method: X-RAY DIFFRACTION
Resolution: 11.5 Å

Loop

Sequence: GCCGAUGAAG*CGAAUGG*CCA*UAU*AUGGGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC
Length: 60 nucleotides
Bulged bases: 4V4G|1|JB|U|49, 4V4G|1|JB|G|197, 4V4G|1|JB|A|200, 4V4G|1|JB|G|209, 4V4G|1|JB|C|241
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4G|1|JB|G|44
4V4G|1|JB|C|45
4V4G|1|JB|C|46
4V4G|1|JB|G|47
4V4G|1|JB|A|48
4V4G|1|JB|U|49
4V4G|1|JB|G|50
4V4G|1|JB|A|51
4V4G|1|JB|A|52
4V4G|1|JB|G|53
*
4V4G|1|JB|C|114
4V4G|1|JB|G|115
4V4G|1|JB|A|116
4V4G|1|JB|A|117
4V4G|1|JB|U|118
4V4G|1|JB|G|119
4V4G|1|JB|G|120
*
4V4G|1|JB|C|127
4V4G|1|JB|C|128
4V4G|1|JB|A|129
*
4V4G|1|JB|U|142
4V4G|1|JB|A|143
4V4G|1|JB|U|144
*
4V4G|1|JB|A|153
4V4G|1|JB|U|154
4V4G|1|JB|G|155
4V4G|1|JB|G|156
4V4G|1|JB|G|157
4V4G|1|JB|A|158
4V4G|1|JB|A|159
4V4G|1|JB|C|160
*
4V4G|1|JB|G|191
4V4G|1|JB|G|192
4V4G|1|JB|A|193
4V4G|1|JB|G|194
4V4G|1|JB|A|195
4V4G|1|JB|A|196
4V4G|1|JB|G|197
4V4G|1|JB|A|198
4V4G|1|JB|A|199
4V4G|1|JB|A|200
4V4G|1|JB|G|201
*
4V4G|1|JB|C|208
4V4G|1|JB|G|209
4V4G|1|JB|A|210
4V4G|1|JB|U|211
4V4G|1|JB|U|212
*
4V4G|1|JB|A|239
4V4G|1|JB|U|240
4V4G|1|JB|C|241
4V4G|1|JB|A|242
4V4G|1|JB|G|243
*
4V4G|1|JB|C|439
4V4G|1|JB|U|440
4V4G|1|JB|A|441
4V4G|1|JB|A|442
4V4G|1|JB|A|443
4V4G|1|JB|U|444
4V4G|1|JB|A|445
4V4G|1|JB|C|446

Current chains

Chain JB: 23S RIBOSOMAL RNA

Nearby chains

Chain J4: 50S ribosomal protein L34
Chain JU: 50S ribosomal protein L23
Chain JY: 50S ribosomal protein L29

J9_4V4G_001