Loop J9_4V4X

3D structure

PDB id: 4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method: X-RAY DIFFRACTION
Resolution: 5 Å

Loop

Sequence: GCCGAUGAAG*CGAAUG*CG*CACC*GGGGGGAAC*GAGAGGAAAG*CGACU*ACCA*UAAGUAC
Length: 57 nucleotides
Bulged bases: 4V4X|1|BA|U|50, 4V4X|1|BA|U|120, 4V4X|1|BA|A|223, 4V4X|1|BA|C|264
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4X|1|BA|G|45
4V4X|1|BA|C|46
4V4X|1|BA|C|47
4V4X|1|BA|G|48
4V4X|1|BA|A|49
4V4X|1|BA|U|50
4V4X|1|BA|G|51
4V4X|1|BA|A|52
4V4X|1|BA|A|53
4V4X|1|BA|G|54
*
4V4X|1|BA|C|116
4V4X|1|BA|G|117
4V4X|1|BA|A|118
4V4X|1|BA|A|119
4V4X|1|BA|U|120
4V4X|1|BA|G|121
*
4V4X|1|BA|C|130
4V4X|1|BA|G|131
*
4V4X|1|BA|C|148
4V4X|1|BA|A|149
4V4X|1|BA|C|150
4V4X|1|BA|C|151
*
4V4X|1|BA|G|175
4V4X|1|BA|G|176
4V4X|1|BA|G|177
4V4X|1|BA|G|178
4V4X|1|BA|G|179
4V4X|1|BA|G|180
4V4X|1|BA|A|181
4V4X|1|BA|A|182
4V4X|1|BA|C|183
*
4V4X|1|BA|G|215
4V4X|1|BA|A|216
4V4X|1|BA|G|217
4V4X|1|BA|A|218
4V4X|1|BA|G|219
4V4X|1|BA|G|220
4V4X|1|BA|A|221
4V4X|1|BA|A|222
4V4X|1|BA|A|223
4V4X|1|BA|G|224
*
4V4X|1|BA|C|231
4V4X|1|BA|G|232
4V4X|1|BA|A|233
4V4X|1|BA|C|234
4V4X|1|BA|U|235
*
4V4X|1|BA|A|262
4V4X|1|BA|C|263
4V4X|1|BA|C|264
4V4X|1|BA|A|265
*
4V4X|1|BA|U|427
4V4X|1|BA|A|428
4V4X|1|BA|A|429
4V4X|1|BA|G|430
4V4X|1|BA|U|431
4V4X|1|BA|A|432
4V4X|1|BA|C|433

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain B6: 50S ribosomal protein L34
Chain BW: 50S ribosomal protein L23

J9_4V4X_001