J9_6ZJ3_001
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GUUUC*GGUCAA*UC*GUCC*GACC*G(OMG)CAA*UG*CC*GUAC
- Length
- 34 nucleotides
- Bulged bases
- 6ZJ3|1|LF|C|1938
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LF|G|1906
6ZJ3|1|LF|U|1907
6ZJ3|1|LF|U|1908
6ZJ3|1|LF|U|1909
6ZJ3|1|LF|C|1910
*
6ZJ3|1|LF|G|1935
6ZJ3|1|LF|G|1936
6ZJ3|1|LF|U|1937
6ZJ3|1|LF|C|1938
6ZJ3|1|LF|A|1939
6ZJ3|1|LF|A|1940
*
6ZJ3|1|LG|U|2033
6ZJ3|1|LG|C|2034
*
6ZJ3|1|LH|G|2285
6ZJ3|1|LH|U|2286
6ZJ3|1|LH|C|2287
6ZJ3|1|LH|C|2288
*
6ZJ3|1|LF|G|1943
6ZJ3|1|LF|A|1944
6ZJ3|1|LF|C|1945
6ZJ3|1|LF|C|1946
*
6ZJ3|1|LG|G|2008
6ZJ3|1|LG|OMG|2009
6ZJ3|1|LG|C|2010
6ZJ3|1|LG|A|2011
6ZJ3|1|LG|A|2012
*
6ZJ3|1|LG|U|2031
6ZJ3|1|LG|G|2032
*
6ZJ3|1|LF|C|1941
6ZJ3|1|LF|C|1942
*
6ZJ3|1|LH|G|2289
6ZJ3|1|LH|U|2290
6ZJ3|1|LH|A|2291
6ZJ3|1|LH|C|2292
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LG
- LSU rRNA chain 6
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lf
- Ribosomal protein eL19
- Chain Lk
- Ribosomal protein uL23
- Chain Lp
- Ribosomal protein uL29
- Chain Lw
- Ribosomal protein eL34
- Chain Ly
- Ribosomal protein eL37
- Chain Lz
- Ribosomal protein eL38
Coloring options: