J9_8VR4_001
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUGGCUAAAC*GGGUUGUG*CCGAGUAG*UGAAUCUGC*GUAAGCCUGAAUAC
- Length
- 75 nucleotides
- Bulged bases
- 8VR4|1|A|U|266, 8VR4|1|A|U|316, 8VR4|1|A|U|318, 8VR4|1|A|U|493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VR4|1|A|G|42
8VR4|1|A|C|43
*
8VR4|1|A|G|178
8VR4|1|A|G|179
8VR4|1|A|A|180
8VR4|1|A|A|181
8VR4|1|A|C|182
*
8VR4|1|A|G|213
8VR4|1|A|G|214
8VR4|1|A|A|215
8VR4|1|A|A|216
8VR4|1|A|G|217
8VR4|1|A|A|218
8VR4|1|A|G|219
8VR4|1|A|A|220
8VR4|1|A|A|221
8VR4|1|A|A|222
8VR4|1|A|A|223
*
8VR4|1|A|U|231
8VR4|1|A|G|232
8VR4|1|A|A|233
8VR4|1|A|U|234
8VR4|1|A|U|235
*
8VR4|1|A|A|262
8VR4|1|A|G|263
8VR4|1|A|G|264
8VR4|1|A|A|265
8VR4|1|A|U|266
8VR4|1|A|G|267
8VR4|1|A|G|268
8VR4|1|A|C|269
8VR4|1|A|U|270
8VR4|1|A|A|271
8VR4|1|A|A|272
8VR4|1|A|A|273
8VR4|1|A|C|274
*
8VR4|1|A|G|312
8VR4|1|A|G|313
8VR4|1|A|G|314
8VR4|1|A|U|315
8VR4|1|A|U|316
8VR4|1|A|G|317
8VR4|1|A|U|318
8VR4|1|A|G|319
*
8VR4|1|A|C|456
8VR4|1|A|C|457
8VR4|1|A|G|458
8VR4|1|A|A|459
8VR4|1|A|G|460
8VR4|1|A|U|461
8VR4|1|A|A|462
8VR4|1|A|G|463
*
8VR4|1|A|U|487
8VR4|1|A|G|488
8VR4|1|A|A|489
8VR4|1|A|A|490
8VR4|1|A|U|491
8VR4|1|A|C|492
8VR4|1|A|U|493
8VR4|1|A|G|494
8VR4|1|A|C|495
*
8VR4|1|A|G|508
8VR4|1|A|U|509
8VR4|1|A|A|510
8VR4|1|A|A|511
8VR4|1|A|G|512
8VR4|1|A|C|513
8VR4|1|A|C|514
8VR4|1|A|U|515
8VR4|1|A|G|516
8VR4|1|A|A|517
8VR4|1|A|A|518
8VR4|1|A|U|519
8VR4|1|A|A|520
8VR4|1|A|C|521
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L9
- Chain Y
- 50S Ribosomal Protein L28
- Chain d
- 50S ribosomal protein L34
Coloring options: