Motif HL_00186.2 Version HL_00186.2 of this group appears in releases 3.22 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4Y4O_152 | 4Y4O | 0.1206 | 0 | 2A | LSU rRNA | G | 1992 | U | 1993 | C | 1994 | U | 1995 | C | 1996 | cWS | |
| 2 | HL_4IOA_048 | 4IOA | 0.0000 | 0 | X | LSU rRNA | G | 1975 | U | 1976 | C | 1977 | U | 1978 | C | 1979 | cWS | |
| 3 | HL_4IOA_036 | 4IOA | 0.9212 | 2 | Pseudoknot geometry with 3' bulge (H) | X | LSU rRNA | G | 1508 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCUC | 2 |
| GAAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCU | 2 |
| AAAAU | 1 |
Release history
| Release | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Pseudoknot geometry with 3' bulge (H) (1)
- Basepair signature
- cWW-R-R
- Heat map statistics
- Min 0.12 | Avg 0.44 | Max 0.94
Coloring options: