#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 51-5
1 HL_4Y4O_1524Y4O0.120602AG1992U1993C1994U1995C1996cWS
2 HL_4IOA_0484IOA0.00000XG1975U1976C1977U1978C1979cWS
3 HL_4IOA_0364IOA0.92122Pseudoknot geometry with 3' bulge (H)XG1508A1510A1511A1512C1514cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUCUC2
GAAAAUC1
Non-Watson-Crick part of the motif
SequenceCounts
UCU2
AAAAU1

Release history

Release3.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Pseudoknot geometry with 3' bulge (H) (1)
  • Basepair signature
    cWW-R-R
    Heat map statistics
    Min 0.12 | Avg 0.44 | Max 0.94
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1165 s