Motif HL_01226.1 Version HL_01226.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_069 | 8C3A | 0.0000 | 1 | 1 | LSU rRNA | C | 3160 | U | 3161 | U | 3162 | U | 3164 | U | 3165 | A | 3166 | G | 3167 | cWW | ncWW | ||
| 2 | HL_7A0S_021 | 7A0S | 0.6318 | 1 | X | LSU rRNA | C | 651 | C | 652 | G | 653 | A | 655 | U | 656 | A | 657 | G | 658 | cWW | ncWW | ||
| 3 | HL_4LVW_001 | 4LVW | 0.8606 | 6 | A | THF riboswitch | A | 33 | A | 34 | U | 35 | G | 41 | U | 42 | G | 44 | U | 45 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUUUUAG | 1 |
| CCGAAUAG | 1 |
| AAUGGGAUGUCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUUA | 1 |
| CGAAUA | 1 |
| AUGGGAUGUCG | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.63 | Avg 0.52 | Max 0.86
Coloring options: