Motif HL_01397.1 Version HL_01397.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RZD_001 | 4RZD | 0.0000 | 0 | A | PreQ1-III riboswitch | C | 4 | A | 5 | A | 6 | C | 7 | U | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | U | 14 | U | 15 | U | 16 | U | 17 | A | 18 | G | 19 | G | 20 | cWW | cWW | |
| 2 | HL_4V5O_053 | 4V5O | 0.6447 | 0 | BA | SSU rRNA | C | 808 | A | 809 | U | 810 | U | 811 | U | 812 | U | 813 | A | 814 | U | 815 | U | 816 | G | 817 | G | 818 | U | 819 | U | 820 | C | 821 | U | 822 | U | 823 | G | 824 | cWW | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACUUAGGAUUUUAGG | 1 |
| CAUUUUAUUGGUUCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUUAGGAUUUUAG | 1 |
| AUUUUAUUGGUUCUU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.64 | Avg 0.32 | Max 0.64
Coloring options: