Motif HL_02862.2 Version HL_02862.2 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_4UYK_003	4UYK	0.3240	1	R	SRP RNA	U	98	G	99	U	100	A	101	G	103	cWW	ntSW
2	HL_7RQB_007	7RQB	0.0000	1	1A	LSU rRNA	A	225	G	226	A	227	A	228	U	230	cWW
3	HL_7A0S_007	7A0S	0.3122	1	X	LSU rRNA	A	202	G	203	A	204	A	205	U	207	cWW	cSW
4	HL_4WF9_007	4WF9	0.3818	1	X	LSU rRNA	A	228	A	229	A	230	A	231	U	233	cWW	cSW
5	HL_5TBW_002	5TBW	0.3355	1	1	LSU rRNA	C	69	A	70	A	71	C	72	G	74	cWW	cSW
6	HL_8C3A_002	8C3A	0.3255	1	1	LSU rRNA	C	68	A	69	A	70	C	71	G	73	cWW	cSW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGUAAG	1
AGAAAU	1
AGAAUU	1
AAAAUU	1
CAACCG	1
CAACAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAA	1
GAAA	1
GAAU	1
AAAU	1
AACC	1
AACA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-F-F-F
Heat map statistics: Min 0.09 | Avg 0.27 | Max 0.46

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