Motif HL_02862.3 Version HL_02862.3 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4UYK_003 | 4UYK | 0.3362 | 1 | R | SRP RNA | U | 98 | G | 99 | U | 100 | A | 101 | G | 103 | cWW | ntSW |
| 2 | HL_8VTW_006 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW | |
| 3 | HL_7A0S_007 | 7A0S | 0.3013 | 1 | X | LSU rRNA | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW | cSW |
| 4 | HL_4WF9_007 | 4WF9 | 0.3976 | 1 | X | LSU rRNA | A | 228 | A | 229 | A | 230 | A | 231 | U | 233 | cWW | cSW |
| 5 | HL_5TBW_002 | 5TBW | 0.3450 | 1 | 1 | LSU rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 6 | HL_8C3A_002 | 8C3A | 0.3327 | 1 | 1 | LSU rRNA | C | 68 | A | 69 | A | 70 | C | 71 | G | 73 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG | 1 |
| AGAAAU | 1 |
| AGAAUU | 1 |
| AAAAUU | 1 |
| CAACCG | 1 |
| CAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA | 1 |
| GAAA | 1 |
| GAAU | 1 |
| AAAU | 1 |
| AACC | 1 |
| AACA | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.27 | Max 0.46
Coloring options: