Motif HL_02975.1 Version HL_02975.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O58_051 | 3O58 | 0.8002 | 5 | 1 | 25S ribosomal RNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | C | 2378 | cWW | tWH |
| 2 | HL_2QBG_052 | 2QBG | 0.4129 | 5 | B | 23S rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | C | 2036 | cWW | tWH |
| 3 | HL_3ADD_002 | 3ADD | 0.2266 | 0 | C | Selenocysteine transfer RNA | A | 31 | C | 32 | G | 37 | A | 38 | U | 39 | ncWW | ntWH |
| 4 | HL_1S72_052 | 1S72 | 0.1875 | 5 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | C | 2077 | cWW | tWH |
| 5 | HL_2ZJR_049 | 2ZJR | 0.1830 | 5 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | C | 2019 | cWW | tWH |
| 6 | HL_3PYO_051 | 3PYO | 0.0000 | 5 | A | 23S ribosomal RNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | C | 2036 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAAGAUGC | 2 |
| GGGAACGGGC | 1 |
| ACGAU | 1 |
| GUGCGGAGUC | 1 |
| GUAAAGAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAGAUG | 2 |
| GGAACGGG | 1 |
| CGA | 1 |
| UGCGGAGU | 1 |
| UAAAGAUG | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_02975.1 | Only in the child motif |
|---|---|---|---|
| HL_02975.2 Compare | HL_3PYO_051, HL_2ZJR_049, HL_2QBG_052, HL_3O58_051, HL_1S72_052 | HL_3ADD_002 |
Coloring options: