Motif HL_04973.1 Version HL_04973.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S03_002 | 1S03 | 0.0000 | 1 | B | 47-MER | A | 22 | G | 23 | G | 24 | C | 25 | A | 26 | A | 27 | U | 29 | cWW | ntSH | |
| 2 | HL_3J7P_005 | 3J7P | 0.9027 | 1 | T-loop with 2 stacked bulged bases (H) | 5 | LSU rRNA | U | 204 | C | 205 | U | 206 | G | 207 | A | 208 | U | 209 | G | 211 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGCAAUU | 1 |
| UCUGAUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCAAU | 1 |
| CUGAUC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- T-loop with 2 stacked bulged bases (H) (1)
- Basepair signature
- cWW-R-tSH-R
- Heat map statistics
- Min 0.90 | Avg 0.45 | Max 0.90
Coloring options: