Motif HL_05018.5 Version HL_05018.5 of this group appears in releases 3.54 to 3.57

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7
1	HL_5TBW_070	5TBW	0.5248	1	1	LSU rRNA	G	3303	A	3305	U	3306	A	3307	C	3308	G	3309	A	3310	C	3311	cWW	cSW
2	HL_4V9F_069	4V9F	0.4750	1	0	LSU rRNA	G	2836	A	2838	C	2839	A	2840	A	2841	G	2842	A	2843	C	2844	cWW	cSW
3	HL_5J7L_201	5J7L	0.3939	1	DA	LSU rRNA	G	2819	A	2821	G	2822	A	2823	C	2824	G	2825	A	2826	C	2827	cWW	cSW
4	HL_7RQB_068	7RQB	0.1387	1	1A	LSU rRNA	G	2819	A	2821	G	2822	A	2823	C	2824	C	2825	A	2826	C	2827	cWW	cSW
5	HL_4WF9_064	4WF9	0.1087	1	X	LSU rRNA	A	2839	A	2841	G	2842	A	2843	U	2844	G	2845	A	2846	U	2847	cWW	cSW
6	HL_7A0S_067	7A0S	0.0000	1	X	LSU rRNA	G	2794	A	2796	G	2797	A	2798	C	2799	C	2800	A	2801	C	2802	cWW	cSW
7	HL_6JXM_002	6JXM	0.7830	0	B	tRNA	G	41	C	42	U	43	A	44	A	45	A	46	A	47	C	48	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAGACCAC	2
GUAUACGAC	1
GUACAAGAC	1
GAAGACGAC	1
AAAGAUGAU	1
GCUAAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGACCA	2
UAUACGA	1
UACAAGA	1
AAGACGA	1
AAGAUGA	1
CUAAAA	1

Release history

Release	3.54	3.55	3.56	3.57
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27
Status	Updated, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-cSW-R-R-R-R
Heat map statistics: Min 0.11 | Avg 0.45 | Max 1.00

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