Motif HL_05272.1 Version HL_05272.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3KFU_002 | 3KFU | 0.0033 | 2 | tRNA anticodon loop with synthetase (H) | K | tRNA | G | 31 | C | 32 | G | 34 | U | 35 | U | 36 | A | 38 | C | 39 | cWW | cWW | ncWw |
| 2 | HL_3KFU_008 | 3KFU | 0.0000 | 2 | tRNA anticodon loop with synthetase (H) | M | tRNA | G | 31 | C | 32 | G | 34 | U | 35 | U | 36 | A | 38 | C | 39 | cWW | cWW | |
| 3 | HL_3KFU_005 | 3KFU | 0.1307 | 2 | tRNA anticodon loop with synthetase | L | tRNA | G | 31 | C | 32 | G | 34 | U | 35 | U | 36 | A | 38 | C | 39 | cWW | cWW | ncWw |
| 4 | HL_3KFU_011 | 3KFU | 0.1318 | 2 | tRNA anticodon loop with synthetase (H) | N | tRNA | G | 31 | C | 32 | G | 34 | U | 35 | U | 36 | A | 38 | C | 39 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUGUUAAC | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGUUAA | 4 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_05272.1 | Only in the child motif |
|---|---|---|---|
| HL_27397.1 Compare | HL_3KFU_002 | HL_3KFU_005, HL_3KFU_008, HL_3KFU_011 |
- Annotations
-
- tRNA anticodon loop with synthetase (H) (3)
- tRNA anticodon loop with synthetase (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.07 | Max 0.13
Coloring options: