Motif HL_05510.1 Version HL_05510.1 of this group appears in releases 0.1 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 3-8 | 4-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_020 | 2ZJR | 0.0000 | 1 | X | LSU rRNA | U | 650 | C | 651 | C | 652 | G | 653 | A | 655 | U | 656 | A | 657 | G | 658 | G | 659 | cWW | ncWW | ncWW | |||
| 2 | HL_2ZJR_053 | 2ZJR | 0.7882 | 2 | X | LSU rRNA | G | 2282 | G | 2283 | U | 2284 | G | 2286 | A | 2288 | A | 2289 | A | 2290 | U | 2291 | C | 2292 | cWW | ncWS | ncWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCGAAUAGG | 1 |
| GGUUGGAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCGAAUAG | 1 |
| GUUGGAAAU | 1 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.79 | Avg 0.39 | Max 0.79
Coloring options: