3D structure

PDB id
2ZJR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
2.91 Å

Loop

Sequence
GGUUGGAAAUC
Length
11 nucleotides
Bulged bases
2ZJR|1|X|U|2285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05510.1
Basepair signature
cWW-R-R-R-R-R-R
Number of instances in this motif group
2

Unit IDs

2ZJR|1|X|G|2282
2ZJR|1|X|G|2283
2ZJR|1|X|U|2284
2ZJR|1|X|U|2285
2ZJR|1|X|G|2286
2ZJR|1|X|G|2287
2ZJR|1|X|A|2288
2ZJR|1|X|A|2289
2ZJR|1|X|A|2290
2ZJR|1|X|U|2291
2ZJR|1|X|C|2292

Current chains

Chain X
ribosomal 23S RNA

Nearby chains

Chain D
50S ribosomal protein L5
Chain Y
5S ribosomal RNA; 5S rRNA

Coloring options:

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