HL_2ZJR_020

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UCCGAAUAGG

Length

10 nucleotides

Bulged bases

2ZJR|1|X|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05510.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

2ZJR|1|X|U|650
2ZJR|1|X|C|651
2ZJR|1|X|C|652
2ZJR|1|X|G|653
2ZJR|1|X|A|654
2ZJR|1|X|A|655
2ZJR|1|X|U|656
2ZJR|1|X|A|657
2ZJR|1|X|G|658
2ZJR|1|X|G|659

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15