Motif HL_07137.1 Version HL_07137.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3W3S_001 | 3W3S | 0.1864 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | C | 15 | U | 16 | G | 19 | U | 20 | G | 20|||A | cWW | cSH |
| 2 | HL_3W3S_005 | 3W3S | 0.1864 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | C | 15||||43_455 | U | 16||||43_455 | G | 19||||43_455 | U | 20||||43_455 | G | 20|||A|43_455 | cWW | cSH |
| 3 | HL_3AM1_001 | 3AM1 | 0.0000 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
| 4 | HL_3AM1_005 | 3AM1 | 0.0000 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18||||5_555 | U | 19||||5_555 | G | 21||||5_555 | U | 22||||5_555 | A | 23||||5_555 | cWW | cSH |
| 5 | HL_3RG5_009 | 3RG5 | 0.3039 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | G | 15||||1_556 | U | 16||||1_556 | G | 19||||1_556 | U | 20||||1_556 | C | 20|||A|1_556 | cWW | cSH |
| 6 | HL_3RG5_005 | 3RG5 | 0.3039 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 7 | HL_3ADD_001 | 3ADD | 0.3451 | 1 | tRNA D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 8 | HL_3A3A_001 | 3A3A | 0.3431 | 1 | tRNA D-loop (H) | A | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | ncSH |
| 9 | HL_5F9R_004 | 5F9R | 0.4895 | 0 | Other HL | A | tracrRNA | G | 105 | A | 106 | G | 107 | U | 108 | C | 109 | cWW | ncSH |
| 10 | HL_4OO8_008 | 4OO8 | 0.6134 | 0 | E | RNA (97-MER) | G | 87 | A | 88 | G | 89 | U | 90 | C | 91 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGUC | 4 |
| CUGGUG | 2 |
| UUGGUA | 2 |
| GAGUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 8 |
| AGU | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (7)
- tRNA D-loop (H) (1)
- (1)
- Other HL (1)
- Basepair signature
- cWW-cSH
- Heat map statistics
- Min 0.15 | Avg 0.34 | Max 0.67
Coloring options: