Motif HL_09288.1 Version HL_09288.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5E6M_005 | 5E6M | 0.4944 | 3 | E | tRNA | A | 31 | U | 32 | U | 33 | C | 34 | U | 38 | U | 39 | cWW | cwW |
| 2 | HL_4QEI_002 | 4QEI | 0.0000 | 3 | C | tRNA | A | 31 | U | 32 | U | 33 | C | 34 | U | 38 | U | 39 | cWW | cwW |
| 3 | HL_4QEI_005 | 4QEI | 0.0000 | 3 | C | tRNA | A | 31||||2_555 | U | 32||||2_555 | U | 33||||2_555 | C | 34||||2_555 | U | 38||||2_555 | U | 39||||2_555 | cWW | cwW |
| 4 | HL_5FDU_018 | 5FDU | 0.8743 | 1 | 1A | LSU rRNA | C | 635 | G | 636 | U | 637 | U | 638 | A | 640 | G | 641 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCCCAUU | 3 |
| CGUUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCCCAU | 3 |
| GUUGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R
- Heat map statistics
- Min 0.49 | Avg 0.47 | Max 1.00
Coloring options: