Motif HL_10895.2 Version HL_10895.2 of this group appears in releases 3.84 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9
1	HL_7JRT_001	7JRT	0.5877	1	A	RNA nano bracelet	G	35	A	36	G	38	C	39	U	40	C	41	G	42	C	43	A	44	C	45	cWW	cwW
2	HL_7JRT_002	7JRT	0.4879	1	A	RNA nano bracelet	G	102	A	103	G	105	C	106	C	107	U	108	C	109	C	110	A	111	C	112	cWW	ncBW
3	HL_4PJO_001	4PJO	0.3233	1	1	U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4.	G	17	A	18	G	20	U	21	G	22	C	23	A	24	C	25	A	26	C	27	cWW	ntWW
4	HL_5X6B_002	5X6B	0.3825	1	P	tRNA	G	29	A	30	U	32	G	33	C	34	A	35	G	36	A	37	U	38	C	39	cWW	ncWW
5	HL_6WZR_002	6WZR	0.2952	1	A	ZMP/ZTP riboswitch	C	62	G	63	C	65	C	66	G	67	U	68	C	69	U	70	G	71	G	72	cWW
6	HL_5BTP_004	5BTP	0.2408	1	B	ZMP/ZTP riboswitch	C	62	G	63	C	65	C	66	G	67	U	68	C	69	U	70	G	71	G	72	cWW
7	HL_4XWF_002	4XWF	0.0000	1	A	ZMP/ZTP riboswitch	C	50	G	51	C	53	C	54	G	55	C	56	C	57	U	58	G	59	G	60	cWW
8	HL_4ZNP_002	4ZNP	0.3642	1	A	ZMP/ZTP riboswitch	C	58	G	59	A	60	C	62	G	63	C	64	C	65	U	66	G	67	G	68	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGACCGUCUGG	2
GAAGCUCGCAC	1
GAAGCCUCCAC	1
GAGGUGCACAC	1
GACUGCAGAUC	1
CGCCCGCCUGG	1
CGACCGCCUGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GACCGUCUG	2
AAGCUCGCA	1
AAGCCUCCA	1
AGGUGCACA	1
ACUGCAGAU	1
GCCCGCCUG	1
GACCGCCUG	1

Release history

Release	3.84	3.85	3.86	3.87
Date	2024-05-22	2024-06-19	2024-07-17	2024-08-14
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.13 | Avg 0.46 | Max 0.98

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