Motif HL_11805.2 Version HL_11805.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 6-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_054 | 7A0S | 0.9001 | 0 | X | LSU rRNA | G | 2282 | G | 2283 | U | 2284 | U | 2285 | G | 2286 | G | 2287 | A | 2288 | A | 2289 | A | 2290 | U | 2291 | C | 2292 | cWW | ncWWa | ||
| 2 | HL_5J7L_188 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 2303 | G | 2304 | U | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | C | 2310 | A | 2311 | U | 2312 | C | 2313 | cWW | ncWWa | ncWH | |
| 3 | HL_4Y4O_158 | 4Y4O | 0.3233 | 0 | 2A | LSU rRNA | G | 2303 | G | 2304 | A | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | A | 2310 | A | 2311 | U | 2312 | C | 2313 | cWW | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUGGAAAUC | 1 |
| GGUCGGACAUC | 1 |
| GGACGGAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUGGAAAU | 1 |
| GUCGGACAU | 1 |
| GACGGAAAU | 1 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.32 | Avg 0.48 | Max 0.93
Coloring options: