Motif HL_12811.1 Version HL_12811.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-4 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2XZM_004 | 2XZM | 0.3887 | 1 | A | 18S RRNA | C | 185 | C | 186 | U | 187 | G | 188 | G | 190 | cWW | |||
| 2 | HL_3U5H_076 | 3U5H | 0.3573 | 2 | 8 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | |||
| 3 | HL_4A1C_003 | 4A1C | 0.0000 | 2 | 2 | 5.8S RRNA | C | 109 | A | 110 | A | 111 | U | 113 | G | 115 | cWW | |||
| 4 | HL_2ZJR_007 | 2ZJR | 0.5680 | 1 | X | LSU rRNA | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | ncWW | cWW | ncSW | |
| 5 | HL_3V2F_007 | 3V2F | 0.6104 | 1 | A | 23S Ribosomal RNA | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGCG | 1 |
| CACAUUG | 1 |
| CAAGUGG | 1 |
| AGAAUU | 1 |
| AGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGC | 1 |
| ACAUU | 1 |
| AAGUG | 1 |
| GAAU | 1 |
| GAAA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_12811.1 | Only in the parent motif |
|---|---|---|---|
| HL_77942.1 Compare | HL_2XZM_004, HL_2ZJR_007 | HL_3U5H_076, HL_4A1C_003, HL_3V2F_007 | HL_2QBG_025, HL_3PYO_024, HL_2ZJR_023 |
Children motifs
| Child motif | Common motif instances | Only in HL_12811.1 | Only in the child motif |
|---|---|---|---|
| HL_12811.2 Compare | HL_2XZM_004, HL_3V2F_007, HL_4A1C_003, HL_3U5H_076 | HL_2ZJR_007 | HL_4IOA_007 |
Coloring options: