Motif HL_12811.2 Version HL_12811.2 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3V2F_007 | 3V2F | 0.6094 | 1 | A | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW |
| 2 | HL_4IOA_007 | 4IOA | 0.5884 | 1 | X | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW |
| 3 | HL_2XZM_004 | 2XZM | 0.0000 | 1 | A | C | 185 | C | 186 | U | 187 | G | 188 | G | 190 | cWW |
| 4 | HL_3U5H_076 | 3U5H | 0.3670 | 2 | 8 | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW |
| 5 | HL_4A1C_003 | 4A1C | 0.3887 | 2 | 2 | C | 109 | A | 110 | A | 111 | U | 113 | G | 115 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAAAU | 1 |
| AGAAUU | 1 |
| CCUGCG | 1 |
| CACAUUG | 1 |
| CAAGUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 1 |
| GAAU | 1 |
| CUGC | 1 |
| ACAUU | 1 |
| AAGUG | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_12811.2 | Only in the parent motif |
|---|---|---|---|
| HL_12811.1 Compare | HL_2XZM_004, HL_3V2F_007, HL_4A1C_003, HL_3U5H_076 | HL_4IOA_007 | HL_2ZJR_007 |
Children motifs
| Child motif | Common motif instances | Only in HL_12811.2 | Only in the child motif |
|---|---|---|---|
| HL_23971.1 Compare | HL_3U5H_076, HL_4A1C_003 | HL_2XZM_004, HL_3V2F_007, HL_4IOA_007 | HL_4FY3_011, HL_4IOA_018 |
| HL_21675.1 Compare | HL_3V2F_007, HL_4IOA_007 | HL_2XZM_004, HL_3U5H_076, HL_4A1C_003 | HL_1S72_007 |
Coloring options: