Motif HL_77942.1 Version HL_77942.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_007 | 2ZJR | 0.5352 | 0 | X | A | 202 | G | 203 | A | 204 | A | 205 | U | 206 | U | 207 | cWW | cSW |
| 2 | HL_2XZM_004 | 2XZM | 0.1530 | 0 | A | C | 185 | C | 186 | U | 187 | G | 188 | C | 189 | G | 190 | cWW | |
| 3 | HL_2ZJR_023 | 2ZJR | 0.0000 | 1 | X | U | 792 | G | 793 | A | 795 | A | 796 | A | 797 | G | 798 | cWW | ncSW |
| 4 | HL_3PYO_024 | 3PYO | 0.8995 | 1 | A | U | 779 | G | 780 | A | 782 | A | 783 | A | 784 | G | 785 | cWW | cSW |
| 5 | HL_2QBG_025 | 2QBG | 0.9609 | 1 | B | U | 779 | G | 780 | A | 782 | A | 783 | G | 784 | G | 785 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAAG | 2 |
| AGAAUU | 1 |
| CCUGCG | 1 |
| UGAAAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAA | 2 |
| GAAU | 1 |
| CUGC | 1 |
| GAAAG | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_77942.1 | Only in the child motif |
|---|---|---|---|
| HL_12811.1 Compare | HL_2XZM_004, HL_2ZJR_007 | HL_2QBG_025, HL_3PYO_024, HL_2ZJR_023 | HL_3U5H_076, HL_4A1C_003, HL_3V2F_007 |
| HL_62228.1 Compare | HL_2QBG_025, HL_2ZJR_023 | HL_2XZM_004, HL_3PYO_024, HL_2ZJR_007 | HL_3V2F_024, HL_1S72_025 |
Coloring options: