Motif HL_15414.1 Version HL_15414.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4ANG_001 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_1 | G | 8||A||P_1 | A | 9||A||P_1 | G | 10||A||P_1 | A | 13||A||P_1 | C | 14||A||P_1 | C | 15||A||P_1 | cWW | ncWW | |
| 2 | HL_4ANG_005 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_P | G | 8||A||P_P | A | 9||A||P_P | G | 10||A||P_P | A | 13||A||P_P | C | 14||A||P_P | C | 15||A||P_P | |||
| 3 | HL_4WJ3_010 | 4WJ3 | 0.7690 | 5 | T | tRNA | U | 12 | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | A | 23 | cWW | ncWW | ncWS |
| 4 | HL_4JXZ_001 | 4JXZ | 0.9610 | 4 | B | tRNA | C | 912 | A | 913 | A | 914 | G | 915 | A | 921 | A | 922 | G | 923 | cWW | tSH | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGACC | 2 |
| UCAGUCGGUAGA | 1 |
| CAAGCGGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGAC | 2 |
| CAGUCGGUAG | 1 |
| AAGCGGUAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-cWS-R
- Heat map statistics
- Min 0.49 | Avg 0.49 | Max 0.96
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