Motif HL_16389.1 Version HL_16389.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8S95_004 | 8S95 | 0.5276 | 2 | C | A | 91 | U | 92 | U | 93 | G | 96 | G | 97 | U | 98 | cWW | ncWW | ||
| 2 | HL_8C3A_195 | 8C3A | 0.0000 | 0 | CM | U | 188 | G | 189 | U | 190 | U | 191 | U | 192 | G | 193 | cWW | |||
| 3 | HL_3DIL_004 | 3DIL | 0.4210 | 0 | A | G | 149 | G | 150 | U | 151 | C | 152 | U | 153 | C | 154 | cWW | ncSW | ||
| 4 | HL_1QU2_002 | 1QU2 | 0.6737 | 3 | T | C | 31 | C | 32 | U | 33 | U | 36 | A | 38 | G | 39 | cWW | ncWW | ntSW | |
| 5 | HL_8VTW_025 | 8VTW | 0.7961 | 2 | 1A | C | 884 | C | 885 | C | 886 | C | 889 | A | 890 | G | 892 | cWW | ncSW | ||
| 6 | HL_1S03_002 | 1S03 | 0.7712 | 2 | B | A | 22 | G | 23 | G | 24 | A | 26 | A | 27 | U | 29 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGCGGU | 1 |
| UGUUUG | 1 |
| GGUCUC | 1 |
| CCUGAUAAG | 1 |
| CCCACCAG | 1 |
| AGGCAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGCGG | 1 |
| GUUU | 1 |
| GUCU | 1 |
| CUGAUAA | 1 |
| CCACCA | 1 |
| GGCAAU | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.42 | Avg 0.55 | Max 0.96
Coloring options: