Motif HL_16405.1 Version HL_16405.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4ANG_001 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_1 | G | 8||A||P_1 | A | 9||A||P_1 | G | 10||A||P_1 | A | 13||A||P_1 | C | 14||A||P_1 | C | 15||A||P_1 | cWW | ncWW | |
| 2 | HL_4ANG_005 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_P | G | 8||A||P_P | A | 9||A||P_P | G | 10||A||P_P | A | 13||A||P_P | C | 14||A||P_P | C | 15||A||P_P | |||
| 3 | HL_4WJ3_007 | 4WJ3 | 0.6596 | 5 | S | tRNA | U | 12 | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | A | 23 | cWW | ncWW | |
| 4 | HL_4JXZ_001 | 4JXZ | 0.9610 | 4 | B | tRNA | C | 912 | A | 913 | A | 914 | G | 915 | A | 921 | A | 922 | G | 923 | cWW | tSH | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGACC | 2 |
| UCAGUCGGUAGA | 1 |
| CAAGCGGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGAC | 2 |
| CAGUCGGUAG | 1 |
| AAGCGGUAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.54 | Avg 0.47 | Max 0.96
Coloring options: