Motif HL_16845.2 Version HL_16845.2 of this group appears in releases 3.3 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_185 | 5J7L | 0.5298 | 2 | DA | LSU rRNA | G | 2209 | U | 2210 | A | 2212 | C | 2214 | C | 2215 | cWW | ||
| 2 | HL_4WF9_048 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | C | 2236 | U | 2237 | A | 2239 | C | 2241 | G | 2242 | ncWW | ||
| 3 | HL_5J7L_179 | 5J7L | 0.9150 | 1 | GNRA related | DA | LSU rRNA | C | 1806 | G | 1807 | A | 1809 | A | 1810 | G | 1811 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAAUCC | 1 |
| CUUAUCG | 1 |
| CGAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAUC | 1 |
| UUAUC | 1 |
| GAAA | 1 |
- Annotations
-
- (2)
- GNRA related (1)
- Basepair signature
- cWW-R-R
- Heat map statistics
- Min 0.53 | Avg 0.53 | Max 0.93
Coloring options: