Motif HL_17086.1 Version HL_17086.1 of this group appears in releases 3.2 to 3.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-7 | 4-10 | 5-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R0D_006 | 4R0D | 0.8785 | 0 | A | Group II catalytic intron | U | 217 | U | 218 | C | 219 | G | 220 | A | 221 | C | 222 | A | 223 | U | 224 | A | 225 | A | 226 | G | 227 | G | 228 | G | 229 | ncWW | cSW | ntSH | ||||
| 2 | HL_4WFL_001 | 4WFL | 0.0000 | 0 | A | LSRP RNA | G | 19 | A | 20 | G | 21 | G | 22 | U | 23 | A | 24 | G | 25 | C | 26 | G | 27 | G | 28 | U | 29 | G | 30 | C | 31 | cWW | cWW | tSH | ntSHa | |||
| 3 | HL_4V88_199 | 4V88 | 0.2338 | 0 | A6 | SSU rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCGACAUAAGGG | 1 |
| GAGGUAGCGGUGC | 1 |
| AAUGUAAAUACCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCGACAUAAGG | 1 |
| AGGUAGCGGUG | 1 |
| AUGUAAAUACC | 1 |
- Annotations
- Basepair signature
- cWW-cWW-R-R-R-tSH-R-R-R
- Heat map statistics
- Min 0.23 | Avg 0.46 | Max 0.94
Coloring options: