Motif HL_18012.1 Version HL_18012.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RUM_001 | 4RUM | 0.5287 | 1 | A | NiCo riboswitch | C | 27 | A | 28 | G | 29 | G | 31 | C | 32 | G | 33 | cWW | |
| 2 | HL_1Y0Q_005 | 1Y0Q | 0.0000 | 0 | A | Group I catalytic intron | C | 146 | A | 147 | A | 148 | G | 149 | U | 150 | G | 151 | cWW | ncsS |
| 3 | HL_4XWF_001 | 4XWF | 0.4247 | 0 | A | ZMP/ZTP riboswitch | G | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGAGCG | 1 |
| CAAGUG | 1 |
| GGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAGC | 1 |
| AAGU | 1 |
| GAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.42 | Avg 0.36 | Max 0.66
Coloring options: