Motif HL_18473.1 Version HL_18473.1 of this group appears in releases 3.3 to 3.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-3 | 1-4 | 2-3 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3P49_005 | 3P49 | 0.4475 | 0 | A | Glycine riboswitch | A | 19 | U | 20 | A | 25 | U | 26 | ncWW | cWW | ncWW | ||
| 2 | HL_2ZZM_002 | 2ZZM | 0.0000 | 5 | B | RNA (84-MER) | G | 31 | C | 32 | A | 38 | C | 39 | cWW | ||||
| 3 | HL_5TBW_012 | 5TBW | 0.2949 | 2 | 1 | LSU rRNA | C | 543 | C | 544 | G | 547 | G | 548 | cWW | ncSW | |||
| 4 | HL_361D_001 | 361D | 0.3250 | 2 | A | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAU | 1 |
| GCCUAGGAC | 1 |
| CCUCGG | 1 |
| GGCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA | 1 |
| CCUAGGA | 1 |
| CUCG | 1 |
| GCGA | 1 |
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