Motif HL_18587.2 Version HL_18587.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_017 | 4BPP | 0.3526 | 1 | A | 18S RRNA | U | 748 | U | 750 | U | 751 | C | 752 | C | 753 | A | 754 | G | 755 | G | 756 | cWW | tWH |
| 2 | HL_4CUX_018 | 4CUX | 0.0000 | 1 | 2 | 18S RRNA | U | 764 | U | 766 | U | 767 | C | 768 | A | 769 | A | 770 | A | 771 | G | 772 | cWW | tWH |
| 3 | HL_3U5F_018 | 3U5F | 0.1703 | 1 | 6 | 18S rRNA | U | 764 | U | 766 | U | 767 | C | 768 | A | 769 | A | 770 | A | 771 | G | 772 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUUCAAAG | 2 |
| UGUUCCAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAAA | 2 |
| GUUCCAG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_18587.2 | Only in the parent motif |
|---|---|---|---|
| HL_18587.1 Compare | HL_3U5F_018, HL_4BPP_017 | HL_4CUX_018 |
Children motifs
| Child motif | Common motif instances | Only in HL_18587.2 | Only in the child motif |
|---|---|---|---|
| HL_18587.3 Compare | HL_3U5F_018, HL_4CUX_018, HL_4BPP_017 | HL_3J7A_015 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-tWH-R-R-R
- Heat map statistics
- Min 0.17 | Avg 0.21 | Max 0.43
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