Motif HL_20751.3 Version HL_20751.3 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-10 | 2-11 | 3-7 | 3-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SUX_005 | 3SUX | 0.9348 | 0 | X | THF riboswitch | G | 37 | A | 38 | C | 39 | G | 40 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | G | 48 | U | 49 | cWW | ncWW | ncWW | ||
| 2 | HL_8GLP_020 | 8GLP | 0.9177 | 0 | L5 | LSU rRNA | C | 1436 | C | 1437 | U | 1438 | C | 1439 | U | 1440 | C | 1441 | C | 1442 | A | 1443 | G | 1444 | U | 1445 | C | 1446 | C | 1447 | G | 1448 | cWW | ||||
| 3 | HL_3D0U_001 | 3D0U | 0.0000 | 1 | A | Lysine Riboswitch RNA | C | 38 | A | 39 | G | 40 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | G | 46 | A | 47 | A | 48 | U | 49 | G | 51 | cWW | tHW | ncHH | ||
| 4 | HL_3DIL_001 | 3DIL | 0.0892 | 1 | A | RNA (174-MER) | C | 41 | A | 42 | G | 43 | G | 44 | G | 45 | G | 46 | A | 47 | G | 48 | G | 49 | A | 50 | A | 51 | U | 52 | G | 54 | cWW | tHW | ncHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGGGGAGGAAUCG | 2 |
| GACGGGGAGUUGU | 1 |
| CCUCUCCAGUCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGGGAGGAAUC | 2 |
| ACGGGGAGUUG | 1 |
| CUCUCCAGUCC | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.58 | Max 0.97
Coloring options: