Motif HL_22131.1 Version HL_22131.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5G2X_013 | 5G2X | 0.9262 | 0 | A | Group II catalytic intron | G | 562 | A | 563 | A | 564 | A | 565 | A | 566 | C | 567 | C | 568 | ncWW | ncWWa |
| 2 | HL_4V88_151 | 4V88 | 0.0000 | 0 | A5 | LSU rRNA | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | cwW |
| 3 | HL_4V91_038 | 4V91 | 0.1511 | 0 | 1 | LSU rRNA | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUAUC | 2 |
| GAAAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAU | 2 |
| AAAAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.15 | Avg 0.45 | Max 0.96
Coloring options: